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<TITLE>HLA peptide motif search results</TITLE>
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<H1>HLA peptide motif search results</H1>
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<TR><TH Colspan="2">User Parameters and Scoring Information</TH></TR>
<TR><TD ALIGN="center">method selected to limit number of results</TD><TD ALIGN="center">explicit number&nbsp;&nbsp;</TD></TR>
<TR><TD ALIGN="center">number of results requested</TD><TD ALIGN="center">20</TD></TR>
<TR><TD ALIGN="center">HLA molecule type selected</TD><TD ALIGN="center">A_0201</TD></TR>
<TR><TD ALIGN="center">length selected for subsequences to be scored</TD><TD ALIGN="center">9</TD></TR>
<TR><TD ALIGN="center">echoing mode selected for input sequence</TD><TD ALIGN="center">Y</TD></TR>
<TR><TD ALIGN="center">echoing format</TD><TD ALIGN="center">numbered lines</TD></TR>
<TR><TD ALIGN="center">length of user's input peptide sequence</TD><TD ALIGN="center">1035</TD></TR>
<TR><TD ALIGN="center">number of subsequence scores calculated</TD><TD ALIGN="center">1027</TD></TR>
<TR><TD ALIGN="center">number of top-scoring subsequences reported back in scoring output table</TD><TD ALIGN="center">20</TD></TR></TABLE>
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<TR><TH Colspan="4">Scoring Results</TH></TR>
<TR><TH>Rank</TH><TH>Start Position</TH><TH>Subsequence Residue Listing</TH><TH>Score (Estimate of Half Time of Disassociation of a Molecule Containing This Subsequence)</TH></TR>
<TR><TD ALIGN="center">1</TD><TD ALIGN="center"> 476</TD><TD ALIGN="center"><TT>TLEEFSAKL</TT></TD><TD ALIGN="center">  21.301</TD></TR>
<TR><TD ALIGN="center">2</TD><TD ALIGN="center"> 759</TD><TD ALIGN="center"><TT>TLEEFSAKL</TT></TD><TD ALIGN="center">  21.301</TD></TR>
<TR><TD ALIGN="center">3</TD><TD ALIGN="center"> 570</TD><TD ALIGN="center"><TT>TLEEFSAKL</TT></TD><TD ALIGN="center">  21.301</TD></TR>
<TR><TD ALIGN="center">4</TD><TD ALIGN="center"> 81</TD><TD ALIGN="center"><TT>ELLEQQKAA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">5</TD><TD ALIGN="center"> 551</TD><TD ALIGN="center"><TT>ELLEQQKNA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">6</TD><TD ALIGN="center"> 645</TD><TD ALIGN="center"><TT>ELLEQQKNA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">7</TD><TD ALIGN="center"> 739</TD><TD ALIGN="center"><TT>ELLEQQKNA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">8</TD><TD ALIGN="center"> 457</TD><TD ALIGN="center"><TT>ELLEQQKAA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">9</TD><TD ALIGN="center"> 363</TD><TD ALIGN="center"><TT>ELLEQQKAA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">10</TD><TD ALIGN="center"> 269</TD><TD ALIGN="center"><TT>ELLEQQKAA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">11</TD><TD ALIGN="center"> 928</TD><TD ALIGN="center"><TT>ELLEQQKAA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">12</TD><TD ALIGN="center"> 175</TD><TD ALIGN="center"><TT>ELLEQQKAA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">13</TD><TD ALIGN="center"> 1022</TD><TD ALIGN="center"><TT>ELLEQQKAA</TT></TD><TD ALIGN="center">   5.652</TD></TR>
<TR><TD ALIGN="center">14</TD><TD ALIGN="center"> 873</TD><TD ALIGN="center"><TT>QEQNAKFFA</TT></TD><TD ALIGN="center">   3.082</TD></TR>
<TR><TD ALIGN="center">15</TD><TD ALIGN="center"> 402</TD><TD ALIGN="center"><TT>QEQNAKFFA</TT></TD><TD ALIGN="center">   3.082</TD></TR>
<TR><TD ALIGN="center">16</TD><TD ALIGN="center"> 967</TD><TD ALIGN="center"><TT>QEQNAKFFA</TT></TD><TD ALIGN="center">   3.082</TD></TR>
<TR><TD ALIGN="center">17</TD><TD ALIGN="center"> 120</TD><TD ALIGN="center"><TT>QEQNAKFFA</TT></TD><TD ALIGN="center">   3.082</TD></TR>
<TR><TD ALIGN="center">18</TD><TD ALIGN="center"> 214</TD><TD ALIGN="center"><TT>QEQNAKFFA</TT></TD><TD ALIGN="center">   3.082</TD></TR>
<TR><TD ALIGN="center">19</TD><TD ALIGN="center"> 26</TD><TD ALIGN="center"><TT>QEQNAKFFA</TT></TD><TD ALIGN="center">   3.082</TD></TR>
<TR><TD ALIGN="center">20</TD><TD ALIGN="center"> 308</TD><TD ALIGN="center"><TT>QEQNAKFFA</TT></TD><TD ALIGN="center">   3.082</TD></TR>
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<H3>Echoed User Peptide Sequence<BR>(length = 1035 residues)<BR></H3>
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1      LIMATTYEEF SAKLDRLGEE FNRKMQEQNA KFFADKPDES TLSPEMKEHY
51     EKFERMIKEH TEKFNKKMHE HSEHFKQKFA ELLEQQKAAQ YPSKLDMATT
101    YEEFSAKLDR LDQEFNRKMQ EQNAKFFADK PDESTLSPEM REHYEKFERM
151    IKEHTEKFNK KMHEHSEHFK QKFAELLEQQ KAAQYPSKLA MATTYEEFSA
201    KLDRLDEEFN RKMQEQNAKF FADKPDESTL SPEMKEHYEK FERMIKEHTD
251    KFNKKMHEHS EHFKQKFAEL LEQQKAAQYP SKLGMATTYE EFAAKLDRLD
301    EEFNKKTQEQ NAKFFADKPD ESTLSPEMKE HYEKFERMIK EHTEKFNKKM
351    HEHSEHFKHK FAELLEQQKA AQYPSKLPMA TTYEEFAAKL DRLDEEFNKK
401    MQEQNAKFFA DKPDESTLSP EMKEHYEKFE RMIKEHTEKF NKKMHEHSEH
451    FKHKFAELLE QQKAAQYPGK TCMATTLEEF SAKLDRLDAE FAKKMEEQNK
501    KFFADKPDES TLSPEMKEHY EKFEKMIQEH TDKFNKKMHE HSEHFKAKFA
551    ELLEQQKNAQ FPGKTRMATT LEEFSAKLDR LDAEFAKKME EQNKKFFADK
601    PDESTLSPEI KEHYEKFERM IQEHTDKFNK KMHEHSEHFK SKFAELLEQQ
651    KNAQFPGKTB MATTYEEFAA KLDRLDAEFA KKMEEQNKRF FADKPDEATL
701    SPEMKEHYEK FEKMIQEHTD KFNKKMREHS EHFKAKFAEL LEQQKNAQFP
751    GKCSPMATTL EEFSAKLDRL DAEFAKKMEE QNKKFFADKP DESTLSPEMK
801    EHYEKFERMI QEHTDKFNKK MHEHSEHFKS KFAEPLEQQK NAQFPGKLAM
851    ATTYEEFSAK LDRLDEEFNR KMQEQNAKFF ADKPDESTLS PEMKEHYEKF
901    ERMIKEHTDK FNKKMHEHSE HFKQKFAELL EQQKAAQYPS KLAMATTYEE
951    FSAKLDRLDE EFNRKMQEQN AKFFADKPDE STLSPEMKEH YEKFERMIKE
1001   HTDKFNKKMH EHSEHFKQKF AELLEQQKAA QYPSK
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<BR>query date: Wed Feb 18 2009, 11:53 EST<BR>
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www-bimas@bimas.cit.nih.gov &nbsp;&nbsp;Ronald&nbsp;&nbsp;Taylor&nbsp;&nbsp; of &nbsp;&nbsp;BIMAS&nbsp;&nbsp;/&nbsp;&nbsp;CBEL&nbsp;&nbsp;/&nbsp;&nbsp;CIT&nbsp;&nbsp;/&nbsp;&nbsp;NIH
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